对于密码子优化,可以采取哪些步骤来保持野生型蛋白质表达水平?

We have moved beyond simple codon frequency tables. Our new algorithm prioritizes biological expression by focusing on:

  • mRNA Stability
  • Secondary Structure
  • Ribosome Processivity

We have decoupled manufacturability parameters from the core optimization to focus primarily on protein expression. However, if the algorithm cannot find a manufacturable solution, it will automatically attempt to fix localized regions of extreme complexity. We do this while minimizing any impact on the expression profile.

Important: While we optimize for the best possible DNA composition, please remember that protein expression is multifactorial; DNA sequence is just one of many variables influencing your final yield.


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如果我的基因被评为“不可能”,是否仍然可以进行合成?

目前,我们无法合成评级为“不可能”的基因。导致我们的算法将基因评级为“不可能”的因素有多种,而每个基因序列的具体参数是唯一的。我们的算法为专有算法,是利用机器学习开发的。除机器学习外,我们的算法还考虑了以下因素:

  • GC 百分比在 25%-65% 之间
  • 最大均聚物长度 <10
  • 低同源性

以上因素的任意独特组合会导致特定基因序列被评为“不可能”。

 


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Twist 的密码子优化目前支持哪些生物体?

Twist supports over 150 organisms, including most frequently used organisms such as E. coli, human, CHO, mouse and yeast.


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