Publications
Research squareJul 2024 DOI:
10.21203/rs.3.rs-4656898/v1

Epigenome-wide DNA Methylation Association Study of CHIP Provides Insight into Perturbed Gene Regulation

Levy, Daniel; Kirmani, Sara; Huan, Tianxiao; Amburg, Joseph Van; Joehanes, Roby; Uddin, Md Mesbah; Nguyen, Ngoc Quynh; Yu, Bing; Brody, Jennifer; Fornage, Myriam; Bressler, Jan; Sotoodehnia, Nona; Ong, David; Puddu, Fabio; Floyd, James; Ballantyne, Christie; Psaty, Bruce; Raffield, Laura; Natarajan, Pradeep; Conneely, Karen; Carson, April; Lange, Leslie; Ferrier, Kendra; Heard-Costa, Nancy; Murabito, Joanne; Bick, Alexander
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Abstract
With age, hematopoietic stem cells can acquire somatic mutations in leukemogenic genes that confer a proliferative advantage in a phenomenon termed clonal hematopoiesis of indeterminate potential (CHIP). How these mutations confer a proliferative advantage and result in increased risk for numerous age-related diseases remains poorly understood. We conducted a multiracial meta-analysis of epigenome-wide association studies (EWAS) of CHIP and its subtypes in four cohorts (N=8196) to elucidate the molecular mechanisms underlying CHIP and illuminate how these changes influence cardiovascular disease risk. The EWAS findings were functionally validated using human hematopoietic stem cell (HSC) models of CHIP. A total of 9615 CpGs were associated with any CHIP, 5990 with DNMT3A CHIP, 5633 with TET2 CHIP, and 6078 with ASXL1 CHIP (P
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