Publications
Research SquareJan 2024 DOI:
10.21203/rs.3.rs-3760178/v1

Genome-guided isolation of Fervidibacter sacchari, an aerobic, hyperthermophilic polysaccharide-degrading specialist

Hedlund, Brian; Nou, Nancy; Covington, Jonathan; Lai, Dengxun; Mayali, Xavier; Seymour, Cale; Johnston, Juliet; Jiao, Jian-Yu; Buessecker, Steffen; Mosier, Damon; Muok, Alise; Torosian, Nicole; Cook, Allison; Briegel, Ariane; Woyke, Tanja; Eloe-Fadrosh, Emiley; Shapiro, Nicole; Bryan, Scott; Sleezer, Savannah; Dimapilis, Joshua; Gonzalez, Cristina; Gonzalez, Lizett; Noriega, Marlene; Hess, Matthias; Carlson, Ross; Liu, Lan; Li, Meng-Meng; Lian, Zheng-Han; Zhu, Siqi; Liu, Fan; Sun, Xian; Gao, Beile; Mewalal, Ritesh; Harmon-Smith, Miranda; Blaby, Ian; Cheng, Jan-Fang; Weber, Peter; Grigorean, Gabriela; Li, Wen-Jun; Dekas, Anne; Dodsworth, Jeremy; Pett-Ridge, Jennifer; Palmer, Marike
Product Used
Genes
Abstract
Few aerobic hyperthermophiles degrade polysaccharides. Here, we describe the genome-enabled enrichment and optical tweezer-based isolation of an aerobic polysaccharide-degrading hyperthermophile, Fervidibacter sacchari, which was originally ascribed to candidate phylum Fervidibacteria. F. sacchari uses polysaccharides and monosaccharides as sole carbon sources from 65-87.5 °C and expresses 191 carbohydrate-active enzymes (CAZymes) according to RNA-Seq and proteomics, including 30 with unusual glycoside hydrolase (GH)109, 177, or 179 domains. Many CAZymes were also expressed in a proteolytic enrichment culture, and fluorescence in situ hybridization and nanoscale secondary ion mass spectrometry confirmed rapid assimilation of 13C-starch in spring sediments. Purified GHs were optimally active at 80-100 °C on eight different polysaccharides. Finally, we reassign Fervidibacteria as a class within phylum Armatimonadota, along with 18 other species, and trace the evolution of aerobic and anaerobic polysaccharide catabolism within the phylum. This study establishes Fervidibacteria as unique hyperthermophilic polysaccharide-degrading specialists in terrestrial geothermal springs.
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Genes

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