Publications
Molecular cellAug 2025 |
85
(
15
),
2919-2936.e12
DOI:
10.1016/j.molcel.2025.06.027

Nucleosomes specify co-factor access to p53

Chakraborty, Deyasini; Sandate, Colby R; Isbel, Luke; Kempf, Georg; Weiss, Joscha; Cavadini, Simone; Kater, Lukas; Seebacher, Jan; Kozicka, Zuzanna; Stoos, Lisa; Grand, Ralph S; Schübeler, Dirk; Michael, Alicia K; Thomä, Nicolas H
Product Used
Variant Libraries
Abstract
Pioneer transcription factors (TFs) engage chromatinized DNA motifs. However, it is unclear how the resultant TF-nucleosome complexes are decoded by co-factors. In humans, the TF p53 regulates cell-cycle progression, apoptosis, and the DNA damage response, with a large fraction of p53-bound sites residing in nucleosome-harboring inaccessible chromatin. We examined the interaction of chromatin-bound p53 with co-factors belonging to the ubiquitin proteasome system (UPS). At two distinct motif locations on the nucleosome (super-helical location [SHL]-5.7 and SHL+5.9), the E3 ubiquitin ligase E6-E6AP was unable to bind nucleosome-engaged p53. The deubiquitinase USP7, on the other hand, readily engages nucleosome-bound p53 in vitro and in cells. A corresponding cryo-electron microscopy (cryo-EM) structure shows USP7 engaged with p53 and nucleosomes. Our work illustrates how chromatin imposes a co-factor-selective barrier for p53 interactors, whereby flexibly tethered interaction domains of co-factors and TFs govern compatibility between co-factors, TFs, and chromatin.
Product Used
Variant Libraries

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