Publications
Nucleic acids researchDec 2019 |
47
(
22
),
11956-11962
DOI:
10.1093/nar/gkz998

Rapid in vitro production of single-stranded DNA

Minev, Dionis; Guerra, Richard; Kishi, Jocelyn Y; Smith, Cory; Krieg, Elisha; Said, Khaled; Hornick, Amanda; Sasaki, Hiroshi M; Filsinger, Gabriel; Beliveau, Brian J; Yin, Peng; Church, George M; Shih, William M
Product Used
Oligo Pools
Abstract
There is increasing demand for single-stranded DNA (ssDNA) of lengths >200 nucleotides (nt) in synthetic biology, biological imaging and bionanotechnology. Existing methods to produce high-purity long ssDNA face limitations in scalability, complexity of protocol steps and/or yield. We present a rapid, high-yielding and user-friendly method for in vitro production of high-purity ssDNA with lengths up to at least seven kilobases. Polymerase chain reaction (PCR) with a forward primer bearing a methanol-responsive polymer generates a tagged amplicon that enables selective precipitation of the modified strand under denaturing conditions. We demonstrate that ssDNA is recoverable in ∼40-50 min (time after PCR) with >70% yield with respect to the input PCR amplicon, or up to 70 pmol per 100 μl PCR reaction. We demonstrate that the recovered ssDNA can be used for CRISPR/Cas9 homology directed repair in human cells, DNA-origami folding and fluorescent in-situ hybridization.
Product Used
Oligo Pools

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