Publications
Science immunologyAug 2021 |
6
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62
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DOI:
10.1126/sciimmunol.abl4348

X-linked recessive TLR7 deficiency in ~1% of men under 60 years old with life-threatening COVID-19

Asano, Takaki; Boisson, Bertrand; Onodi, Fanny; Matuozzo, Daniela; Moncada-Velez, Marcela; Maglorius Renkilaraj, Majistor Raj Luxman; Zhang, Peng; Meertens, Laurent; Bolze, Alexandre; Materna, Marie; Korniotis, Sarantis; Gervais, Adrian; Talouarn, Estelle; Bigio, Benedetta; Seeleuthner, Yoann; Bilguvar, Kaya; Zhang, Yu; Neehus, Anna-Lena; Ogishi, Masato; Pelham, Simon J; Le Voyer, Tom; Rosain, Jérémie; Philippot, Quentin; Soler-Palacín, Pere; Colobran, Roger; Martin-Nalda, Andrea; Rivière, Jacques G; Tandjaoui-Lambiotte, Yacine; Chaïbi, Khalil; Shahrooei, Mohammad; Darazam, Ilad Alavi; Olyaei, Nasrin Alipour; Mansouri, Davood; Hatipoğlu, Nevin; Palabiyik, Figen; Ozcelik, Tayfun; Novelli, Giuseppe; Novelli, Antonio; Casari, Giorgio; Aiuti, Alessandro; Carrera, Paola; Bondesan, Simone; Barzaghi, Federica; Rovere-Querini, Patrizia; Tresoldi, Cristina; Franco, Jose Luis; Rojas, Julian; Reyes, Luis Felipe; Bustos, Ingrid G; Arias, Andres Augusto; Morelle, Guillaume; Christèle, Kyheng; Troya, Jesús; Planas-Serra, Laura; Schlüter, Agatha; Gut, Marta; Pujol, Aurora; Allende, Luis M; Rodriguez-Gallego, Carlos; Flores, Carlos; Cabrera-Marante, Oscar; Pleguezuelo, Daniel E; de Diego, Rebeca Pérez; Keles, Sevgi; Aytekin, Gokhan; Akcan, Ozge Metin; Bryceson, Yenan T; Bergman, Peter; Brodin, Petter; Smole, Daniel; Smith, C I Edvard; Norlin, Anna-Carin; Campbell, Tessa M; Covill, Laura E; Hammarström, Lennart; Pan-Hammarström, Qiang; Abolhassani, Hassan; Mane, Shrikant; Marr, Nico; Ata, Manar; Al Ali, Fatima; Khan, Taushif; Spaan, András N; Dalgard, Clifton L; Bonfanti, Paolo; Biondi, Andrea; Tubiana, Sarah; Burdet, Charles; Nussbaum, Robert; Kahn-Kirby, Amanda; Snow, Andrew L; COVID Human Genetic Effort, ; COVID-STORM Clinicians, ; COVID Clinicians, ; Imagine COVID Group, ; French COVID Cohort Study Group, ; CoV-Contact Cohort, ; Amsterdam UMC Covid-, ; Biobank, ; NIAID-USUHS COVID Study Group, ; Bustamante, Jacinta; Puel, Anne; Boisson-Dupuis, Stéphanie; Zhang, Shen-Ying; Béziat, Vivien; Lifton, Richard P; Bastard, Paul; Notarangelo, Luigi D; Abel, Laurent; Su, Helen C; Jouanguy, Emmanuelle; Amara, Ali; Soumelis, Vassili; Cobat, Aurélie; Zhang, Qian; Casanova, Jean-Laurent
Product Used
NGS
Abstract
Autosomal inborn errors of type I IFN immunity and autoantibodies against these cytokines underlie at least 10% of critical COVID-19 pneumonia cases. We report very rare, biochemically deleterious X-linked TLR7 variants in 16 unrelated male individuals aged 7 to 71 years (mean: 36.7 years) from a cohort of 1,202 male patients aged 0.5 to 99 years (mean: 52.9 years) with unexplained critical COVID-19 pneumonia. None of the 331 asymptomatically or mildly infected male individuals aged 1.3 to 102 years (mean: 38.7 years) tested carry such TLR7 variants (p = 3.5 × 10-5). The phenotypes of five hemizygous relatives of index cases infected with SARS-CoV-2 include asymptomatic or mild infection (n=2, 5 and 38 years), or moderate (n=1, 5 years), severe (n=1, 27 years), or critical (n=1, 29 years) pneumonia. Two boys (aged 7 and 12 years) from a cohort of 262 male patients with severe COVID-19 pneumonia (mean: 51.0 years) are hemizygous for a deleterious TLR7 variant. The cumulative allele frequency for deleterious TLR7 variants in the male general population is < 6.5x10-4 We also show that blood B cell lines and myeloid cell subsets from the patients do not respond to TLR7 stimulation, a phenotype rescued by wild-type TLR7 The patients' blood plasmacytoid dendritic cells (pDCs) produce low levels of type I IFNs in response to SARS-CoV-2. Overall, X-linked recessive TLR7 deficiency is a highly penetrant genetic etiology of critical COVID-19 pneumonia, in about 1.8% of male patients below the age of 60 years. Human TLR7 and pDCs are essential for protective type I IFN immunity against SARS-CoV-2 in the respiratory tract.
Product Used
NGS

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