Nature genetics,
Dec 2023
DOI: 10.1038/s41588-023-01592-8
The role of APOBEC3B in lung tumor evolution and targeted cancer therapy resistance
Caswell, Deborah R ;
Gui, Philippe ;
Mayekar, Manasi K ;
Law, Emily K ;
Pich, Oriol ;
Bailey, Chris ;
Boumelha, Jesse ;
Kerr, D Lucas ;
Blakely, Collin M ;
Manabe, Tadashi ;
Martinez-Ruiz, Carlos ;
Bakker, Bjorn ;
De Dios Palomino Villcas, Juan ;
I Vokes, Natalie ;
Dietzen, Michelle ;
Angelova, Mihaela ;
Gini, Beatrice ;
Tamaki, Whitney ;
Allegakoen, Paul ;
Wu, Wei ;
Humpton, Timothy J ;
Hill, William ;
Tomaschko, Mona ;
Lu, Wei-Ting ;
Haderk, Franziska ;
Al Bakir, Maise ;
Nagano, Ai ;
Gimeno-Valiente, Francisco ;
de Carné Trécesson, Sophie ;
Vendramin, Roberto ;
Barbè, Vittorio ;
Mugabo, Miriam ;
Weeden, Clare E ;
Rowan, Andrew ;
McCoach, Caroline E ;
Almeida, Bruna ;
Green, Mary ;
Gomez, Carlos ;
Nanjo, Shigeki ;
Barbosa, Dora ;
Moore, Chris ;
Przewrocka, Joanna ;
Black, James R M ;
Grönroos, Eva ;
Suarez-Bonnet, Alejandro ;
Priestnall, Simon L ;
Zverev, Caroline ;
Lighterness, Scott ;
Cormack, James ;
Olivas, Victor ;
Cech, Lauren ;
Andrews, Trisha ;
Rule, Brandon ;
Jiao, Yuwei ;
Zhang, Xinzhu ;
Ashford, Paul ;
Durfee, Cameron ;
Venkatesan, Subramanian ;
Temiz, Nuri Alpay ;
Tan, Lisa ;
Larson, Lindsay K ;
Argyris, Prokopios P ;
Brown, William L ;
Yu, Elizabeth A ;
Rotow, Julia K ;
Guha, Udayan ;
Roper, Nitin ;
Yu, Johnny ;
Vogel, Rachel I ;
Thomas, Nicholas J ;
Marra, Antonio ;
Selenica, Pier ;
Yu, Helena ;
Bakhoum, Samuel F ;
Chew, Su Kit ;
Reis-Filho, Jorge S ;
Jamal-Hanjani, Mariam ;
Vousden, Karen H ;
McGranahan, Nicholas ;
Van Allen, Eliezer M ;
Kanu, Nnennaya ;
Harris, Reuben S ;
Downward, Julian ;
Bivona, Trever G ;
Swanton, Charles
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ABSTRACT
In this study, the impact of the apolipoprotein B mRNA-editing catalytic subunit-like (APOBEC) enzyme APOBEC3B (A3B) on epidermal growth factor receptor (EGFR)-driven lung cancer was assessed. A3B expression in EGFR mutant (EGFRmut) non-small-cell lung cancer (NSCLC) mouse models constrained tumorigenesis, while A3B expression in tumors treated with EGFR-targeted cancer therapy was associated with treatment resistance. Analyses of human NSCLC models treated with EGFR-targeted therapy showed upregulation of A3B and revealed therapy-induced activation of nuclear factor kappa B (NF-κB) as an inducer of A3B expression. Significantly reduced viability was observed with A3B deficiency, and A3B was required for the enrichment of APOBEC mutation signatures, in targeted therapy-treated human NSCLC preclinical models. Upregulation of A3B was confirmed in patients with NSCLC treated with EGFR-targeted therapy. This study uncovers the multifaceted roles of A3B in NSCLC and identifies A3B as a potential target for more durable responses to targeted cancer therapy.